Responses of contrasting rice genotypes to anaerobic condition during germination

Date

6-2018

Abstract

Most Asian rice farmers are shifting from labor, water, and energy intensive transplanted puddle rice (TPR) to direct-seeded rice (DSR) system due to scarcity of these resources. Although weed problem in DSR can be suppressed with flooding after dry seeding of rice, flooding can cause adverse effects on germination and subsequence growth of rice, resulting in poor crop establishment. However, crop establishment under flooding can be enhanced by developing anaerobic germination (AG) tolerant genotypes for DSR irrigated and rainfed areas where waterlogging during germination is expected because of unleveled fields. The aim of this study is to better understand the adaptive mechanisms of newly-identified AG tolerant genotypes, namely: Bota Bara, Vavilovi, Zi Gan Nan Gu, Kon Suito, compared to the tolerant check Ma_Zhan Red and the sensitive check IR42. We evaluated the morphological and physiological responses related to AG tolerance and studied the genetic variation in the major QTLs AGI and AG2 markers identified before. Six greenhouse and two growth chamber experiments were conducted with three replications in each experiment. AG tolerance in all of the genotypes is associated with better seedling emergence, longer coleoptile, longer shoot and root length, heavier biomass production, well-developed shoot aerenchyma, and faster water absorption rate during the first 48 h after sowing and watering. Rapid starch depletion, higher soluble sugar concentration, higher amylases activities, and higher trehalose-6-phophate phosphatase (TPP) activities in all tolerant genotypes was observed, explaining their improved survival rate and growth under flooding. Increased activities of alcohol dehydrogenase (ADH), pyruvate decarboxylase (PDC), and aldehyde dehydrogenase (ALDH) were observed in all tolerant genotypes under flooded (AG, anaerobic germination) condition compared with saturated (control) condition and also in comparison with the sensitive under flooded condition. Tolerance of anaerobic germination was associated with lower superoxide and hydrogen peroxide (H2O2) concentration, lower malondialdehyde (MDA) concentration, higher DPPH (2,2-diphenyl-1- picrylhydrazyl) scavenging activity, total phenolic compounds concentration, increased concentration of reduced ascorbate, together with higher superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), and guaiacol peroxidase (GPX) activities in all tolerant genotypes. These antioxidants probably reduced the cell damage caused by anoxia during germination. Allelic variation in AG1 and AG2 markers in the new tolerant Bota Bara, Vavilovi and Kon Suito confirmed the genetic variations of AG tolerance with potentially differences mechanism. Although all tolerant genotypes showed similar pattern of carbohydrate depletion in germinating seeds and efficient ROS scavenging activities. This study highlights the involvement of several mechanisms associated with the tolerance of anaerobic condition during germination in rice.

Document Type

Dissertation

Degree

Doctor of Philosophy in Agronomy

College

Graduate School (GS)

Adviser/Committee Chair

Pompe C. Sta. Cruz

Co-adviser

Abelbagi M. Ismal

Committee Member

Nina M. Cadiz, Constancio C. De Guzman, Abelbagi M. Ismal, Pompe C. Sta. Cruz

Language

English

LC Subject

Rice -- Genetics, Rice -- Seedlings -- Effect of floods on, Rice -- Breeding, Rice -- Preharvest sprouting, Agronomy Institute of Crop Science

Location

UPLB Main Library Special Collections Section (USCS)

Call Number

LG 996 2018 A42 T48

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